Course: International HPC Summer School 2017

Topic outline

Introduction

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Welcome to IHPCSS 2017!
This site provides you access to the resources you will need before and during the event. You also have access to a Networking Forum you can use to communicate with fellow IHPCSS participants.
Communication Forums
- Networking Forum
  
  Use this forum to network with fellow IHPCSS instructors, mentors, and students. Feel free to start your own discussion topics.
Preparing for the Summer School
- Attention Students: Things to do before the workshop.
- Run a Job on the HPC Resources Used in the Hands-on Sessions Page
- Meet Hands-On Session Prerequisites Page
- Install Required Software and Data Page
- Prepare for the Poster Session Page
- Begin Mentoring Activities Page
- Update your Moodle Profile Page
Monday, June 26
- Keynote - Recent Advances in Massively Parallel Hemodynamic Modeling Page
  
  Dr. Amanda Randles
  Duke University
  Department of Biomedical Engineering
  amanda.randles@duke.edu
- Hands-on Session: Parallel Programming Methodologies Page
  
  Instructor: John Urbanic
  Pittsburgh Supercomputing Center
  urbanic@psc.edu
- Introduction to the Parallel Programming Challenge Page
- Participant Introductions and Mentoring Overview Page
  
  Presenter: Scott Callaghan
  Southern California Earthquake Center
  scottcal@usc.edu
- Hands-on Session: Parallel Programming - Classic Track Page
  
  Instructor: David Henty
  Edinburgh Parallel Computing Centre
  University of Edinburgh
  d.henty@epcc.ed.ac.uk
- Hands-on Session: Parallel Programming - Accelerator Track Page
  
  Instructor: John Urbanic
  Pittsburgh Supercomputing Center
  urbanic@psc.edu
Tuesday, June 27
- Overview of Compute Canada, PRACE, RIKEN, XSEDE Page
- Spark and Tensorflow for Scientific Data at Scale Page
  
  Presenter: Neal McBurnett
  Independent Consultant in Data Science, Election Integrity, etc.
  nealmcb@gmail.com
- Exascale Challenges in Plasma and Astrophysics Page
  
  Presenter: Frank Jenko
  Max Planck Institute for Plasma Physics, Germany
  University of California, Los Angeles, US
  fsj@ipp.mpg.de
- Simplify Your Science with Workflow Tools Page
  
  Presenter: Scott Callaghan
  University of Southern California, US
  scottcal@usc.edu
- Hands-on Session: Parallel Programming - Classic Track
  This is a continuation of Monday's session.
- Hands-on Session: Parallel Programming - Accelerator Track
  This is a continuation from Monday's session.
- Dinner Buffet and Electronic Poster Session II
  The poster sessions will take place on Monday and Tuesday afternoon, therefore dinner will be held at the university. A buffet style dinner will be provided.
Wednesday, June 28
- HPC Approaches in Life Sciences Page
  
  Presenter: Thomas Cheatham
  University of Utah, U.S.
  tec3@utah.edu
  
  Presenter: Erik Lindahl
  University of Stockholm, Sweden
  erik.lindahl@scilifelab.se
- High Performance Computing to Advance Biomedical Engineering Page
  
  Presenter: Stephanie Termaath
  University of Tennessee, Knoxville, TN, U.S.
  stermaat@utk.edu
- Multi-Tensor Decompositions for Personalized Cancer Diagnosis and Prognosis Page
  
  Presenter: Orly Alter
  University of Utah, Salt Lake City, UT, U.S.
  orly@sci.utah.edu
- Parallel Programming Challenge
- Hands-on Session: Scientific Visualization Page
  
  Instructor: Vetria Byrd
  Purdue University
  vetria.byrd@gmail.com
- HPC Python Programming Page
  
  Instructor: Ramses van Zon
  University of Toronto, Canada
  rzon@scinet.utoronto.ca
- Slides - Orly Alter File
Thursday, June 29
- HPC Challenges in Artificial Intelligence Research Page
  
  Presenter: Kazuki Yoshizoe
  RIKEN Center for Advanced Intelligence Project
  kazuki.yoshizoe@riken.jp
- A Brief History of Climate Modeling Page
  
  Presenter: Warren Washington
  National Center for Atmospheric Research
  wmw@ucar.edu
- HPC Challenges in Materials Science Page
  
  Presenter: Taisuke Ozaki
  University of Tokyo
  t-ozaki@issp.u-tokyo.ac.jp
- Data-intensive Computing and Parallel I/O Page
  
  Presenter: Ritu Arora
  Texas Advanced Computing Center
  rauta@tacc.utexas.edu
- HPC Software Engineering Page
  
  Presenter: Erik Lindahl
  University of Stockholm, Sweden
  erik.lindahl@scilifelab.se
- Mentoring Session Page
  
  The mentoring session will include group discussions on various topics. Click the Mentoring Session link above to see a list of topics.
- Hands-on Session: Performance Analysis and Optimization Page
  
  Instructor: Phil Blood
  Pittsburgh Supercomputing Center
  blood@psc.edu
  
  Instructor: Christian Feld
  Jülich Supercomputing Centre
  c.feld@fz-juelich.de
- Social Event/Dinner
Friday, June 30
- Hands-on Session: Performance Analysis and Optimization
  This is a continuation of Thursday's session.
- Conclude Parallel Programming Challenge
  Announce Winners
  David Henty, EPCC, UK
- Introduction to Spark Page
  
  Instructor: John Urbanic
  Pittsburgh Supercomputing Center
  urbanic@psc.edu
Poster Session
- How to Prepare for the Poster Session
- Student Posters Repository Database
  
  This is the repository of student posters. Enter your poster title, abstract, and file to share with other participants. Once you have entered your poster information you can view other posters.
Mentoring Resources
- Information for Mentees File
Session Slides Repository
This area contains the slides for all sessions.
- Callaghan Sunday evening presentation to mentors File
- Elsa Gonsiorowski presentation for mentees File
- Slides for Monday, June 26
- Slides for Tuesday, June 27
- XSEDE Overview File
- Lindahl PRACE Presentation File
- Van Zon Compute Canada Presentation File
- Callaghan Workflow Tools Presentation File
- HPC Challenges in Plasma and Astrophysics File
- Slides for Wednesday, June 28
- HPC Python Slides File
- hpcpy code.tar File
- HPC approaches in Life Sciences II URL
- HPC Challenge in Biomedical Engineering File
- Slides for Thursday, June 29
- Slides - Arora File
- Slides - Yoshizoe File
- HPC Software Engineering - Lindahl File
- A Brief History of Climate Modeling and its connection to HPC File
- Slides for Friday, June 30
- Hands-on Software Engineering File
Additional Learning Resources
- ARCHER UK National Supercomputing Service IHPCSS-2016-MPI YouTube Playlist URL
- XSEDE's Online Training Catalog URL

Topic outline

Introduction

Welcome to IHPCSS 2017!

This site provides you access to the resources you will need before and during the event. You also have access to a Networking Forum you can use to communicate with fellow IHPCSS participants.

Communication Forums

Preparing for the Summer School

Monday, June 26

Tuesday, June 27

Wednesday, June 28

Thursday, June 29

Friday, June 30

Poster Session

Mentoring Resources

Session Slides Repository

Additional Learning Resources